New Data and Tools
MapMycells
MapMyCells transforms cell types from a concept in publications to a tool for public research.
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Allen Brain Cell Atlas
The Allen Brain Cell Atlas provides a platform for visualizing multimodal single cell data across the mammalian brain.
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Seattle Alzheimer’s Disease Brain Cell Atlas
A multifaceted resource for exploring the cellular and molecular basis of Alzheimer's Disease.
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Cell Type Knowledge Explorer
Explore aggregated and summarized multi-modal information about human, marmoset, and mouse cell types.
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Allen Brain Atlases and Data
Cell Types Database
A database of biological features derived from single cells, from both human and mouse.
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Brain Observatory
A new approach to open data, featuring a survey of in vivo recordings from the mouse visual cortex.
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Mouse Brain Connectivity Atlas
A brain-wide map of neural projections, including cell class-specific data.
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Reference Atlases
High resolution anatomical reference atlases and histology for mouse and human.
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Mouse Brain Atlas
A unique multimodal atlas of the adult mouse brain, featuring anatomic and genomic data.
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Developing Mouse Brain Atlas
A detailed atlas of gene expression across 7 stages of development.
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Mouse Spinal Cord Atlas
A detailed atlas of gene expression across the adult and juvenile mouse spinal cord.
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Adult and Developing NHP Atlas
The NIH Blueprint Non-Human Primate Atlas characterizes the developing rhesus macaque brain.
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Human Brain Atlas
A unique multimodal atlas of the adult human brain, featuring anatomic and genomic data.
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Developing Human Brain
The BrainSpan project is a detailed atlas of gene expression across human development.
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Aging, Dementia and TBI
A dataset for exploring the neuropathology and genomic features of disease and aging.
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Ivy Glioblastoma Atlas Project
IvyGAP is a dataset for exploring the anatomic and genomic basis of glioblastoma.
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Seattle Alzheimer's disease brain cell atlas
A multifaceted resource for exploring the cellular and molecular basis of Alzheimer's Disease.
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Overview
Learn about our major datasets and tools to determine which are the best fit for your needs.
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Transcriptional Landscape of the Brain
Highlights and insights into gene expression, viewed through Allen Brain Atlas datasets and publications
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Behavioral Circuits & Sensory Processing
Data and publications from the Allen Brain Observatory reveal new complexity of neuronal circuitry
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Connectivity Matrices
Multiscale datasets and publications uncover how the brain is wired
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Computational Modeling & Theory
Brain-wide, circuit-level and cell-level biophysical models, modeling tools and key publications
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Cell Taxonomies
View data-driven classifications and key publications analyzing cell types of the mammalian brain
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Toolkit
Access information about biological and technical resources created by the Allen Institute for Brain Science
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