This data set includes single-cell transcriptomes from multiple cortical areas and the hippocampal formation, including 1,093,785 total cells. Samples were collected from dissections of brain regions from ~8 week-old male and female mice, from pan-neuronal transgenic lines.
Read-me file with additional information about the other files in this directory
|Table of cell metadata||443 MB||.csv||
Metadata about each cell. Each entry has an _order, _label, and _color column.
|Gene expression matrix||63 GB||.csv||
Gene expression matrix provided as a csv
|Taxonomy of clusters||1.5 MB||.json||
Serialized cluster hierarchy with all node information embedded.
|Taxonomy metadata||1 MB||.txt||Metadata about the taxonomy.|
|Gene Expression by Cluster, median||45 MB||.csv||
Gene expression aggregated per cluster, calculated as medians.
|Gene Expression by Cluster, trimmed means||57 MB||.csv||Gene expression aggregated per cell type, calculated as trimmed means (25%-75%).|
|2D coordinates||70 MB||.csv||
UMAP coordinates for each cell, as shown in the Transcriptomics Explorer