This category includes coding packages, custom gene-specific or region-specific analyses, data mapping software, and other tools for exploring underlying data from Allen Brain Map resources in new ways.
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These tools provide novel methods to visualize Allen Brain Map data such as generating reproducible plots, custom heatmaps, and imaging of brain architecture.
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These tools either improve Allen Brain Map data or use Allen Brain Map resources to improve data generated in other groups. Data preprocessing software makes data more usable by improving the quality of the data and reformatting it for downstream analysis. Data registration software tools take an imaged brain section or other unprocessed data set and morph it to better match a reference. Similarly, data integration tools combine data from Allen Brain Map and other public sources across projects, data modalities, and brain regions into the same framework.
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These tools allow users to provide additional biological context to a dataset through annotation of gene expression data and segmentation of brain images by brain region.
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